法医学杂志 ›› 2026, Vol. 42 ›› Issue (4): 302-309.DOI: 10.12116/j.issn.1004-5619.2025.450910
收稿日期:2025-09-23
发布日期:2026-10-28
出版日期:2026-08-25
通讯作者:
张恒,吴正升
作者简介:牛晶晶(1986—),女,硕士,主检法医师,主要从事法医病理学和法医临床学研究;E-mail:285501582@qq.com
基金资助:
Jingjing Niu(
), Chunyan Tu, Heng Zhang(
), Zhengsheng Wu(
)
Received:2025-09-23
Online:2026-10-28
Published:2026-08-25
Contact:
Heng Zhang, Zhengsheng Wu
摘要:
目的 利用生物信息学技术筛选急性心肌缺血(acute myocardial ischemia,AMI)生物标志物。 方法 利用基因表达综合(Gene Expression Omnibus,GEO)数据库,获取心肌缺血相关的数据集(GSE415、GSE775、GSE4648、GSE19875、GSE8322),分为AMI数据集(20个对照样本和5个AMI样本)和心肌缺血数据集(16个对照样本和18个心肌缺血样本)。使用加权基因共表达网络分析(weighted gene co-expression network analysis,WGCNA)、最小绝对收缩和选择算子(least absolute shrinkage and selection operator,LASSO)回归及受试者操作特征(receiver operating characteristic,ROC)曲线,筛选出潜在的生物标志物。建立小鼠心肌缺血模型(心肌缺血15 min和心肌缺血60 min),通过实时荧光定量PCR技术验证潜在生物标志物是否可以作为辅助推断AMI的生物标志物。 结果 鉴定AMI最精准的指标是核因子κB抑制蛋白α(inhibitor of nuclear factor-κB alpha,IκBα;AUC=0.91);鉴定心肌缺血较为精准的指标是B细胞易位基因2(B cell translocation gene 2,BTG2;AUC=0.78)和囊泡转运蛋白USE1(AUC=0.77)。验证结果显示,IκBα在对照组、心肌缺血组和AMI组的表达量差异均有统计学意义(P<0.05);BTG2在心肌缺血组的表达量最高(P<0.05);USE1在3个组别中差异均无统计学意义(P>0.05)。 结论 IκBα可用于鉴定AMI和心肌缺血,BTG2可以作为辅助诊断心肌缺血的生物学指标。
中图分类号:
牛晶晶, 涂春艳, 张恒, 吴正升. 基于生物信息学技术筛选并鉴定小鼠急性心肌缺血生物标志物[J]. 法医学杂志, 2026, 42(4): 302-309.
Jingjing Niu, Chunyan Tu, Heng Zhang, Zhengsheng Wu. Screening and Identification of Biomarkers for Acute Myocardial Ischemia in Mice Based on Bioinformatics[J]. Journal of Forensic Medicine, 2026, 42(4): 302-309.
| GSE数据集 | 网址 | 种属来源 | 纳入分析的数据 |
|---|---|---|---|
| GSE415 | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE415 | 小鼠 | 提供对照样本 |
| GSE775 | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE775 | 小鼠 | 提供缺血1~4 h的心肌样本 |
| GSE4648 | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE4648 | 小鼠 | 提供缺血15 min的心肌样本 |
| GSE19875 | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19875 | 小鼠 | 提供对照样本 |
| GSE8322 | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE8322 | 小鼠 | 提供对照样本 |
表1 GSE数据集一览
Tab. 1 Overview of GSE datasets
| GSE数据集 | 网址 | 种属来源 | 纳入分析的数据 |
|---|---|---|---|
| GSE415 | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE415 | 小鼠 | 提供对照样本 |
| GSE775 | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE775 | 小鼠 | 提供缺血1~4 h的心肌样本 |
| GSE4648 | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE4648 | 小鼠 | 提供缺血15 min的心肌样本 |
| GSE19875 | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19875 | 小鼠 | 提供对照样本 |
| GSE8322 | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE8322 | 小鼠 | 提供对照样本 |
| 数据集 | 基因名称 |
|---|---|
| AMI | CISH,MYL6,ANXA2,HSPA1B,IκBα,BTG2,CRIP2,SAA3,CCL2,UQCC1,S100A8,S100A9,ATF3,CCL9,YIPF4,TNP1,TRADD,RUVBL1,FOS,C1QC,S100A6,PRP2,H2BC4,HSPA1A,UQCR10,TMEM70,CXCL1,HADH,MICOS10,ROMO1,PVALB,ATP6V0E2,CD14,USE1,SRSF5 |
| 心肌缺血 | CISH,MYL6,ANXA2,CXCL2,TIMP1,IκBα,MT2,BTG2,CRIP2,SRST,PTGDS,SAA3,CCL2,UQCC1,S100A8,S100A9,YIPF4,TNP1,SNRPB,TRADD,RUVBL1,KRT36,A4GALT,MAP3K6,PNP,MT1,PRP2,UQCR10,MYL12B,TMEM70,HADH,DDB1,ROMO1,PVALB,ATP6V0E2,USE1,SRSF5 |
表2 WGCNA聚类分析结果
Tab. 2 WGCNA clustering analysis results
| 数据集 | 基因名称 |
|---|---|
| AMI | CISH,MYL6,ANXA2,HSPA1B,IκBα,BTG2,CRIP2,SAA3,CCL2,UQCC1,S100A8,S100A9,ATF3,CCL9,YIPF4,TNP1,TRADD,RUVBL1,FOS,C1QC,S100A6,PRP2,H2BC4,HSPA1A,UQCR10,TMEM70,CXCL1,HADH,MICOS10,ROMO1,PVALB,ATP6V0E2,CD14,USE1,SRSF5 |
| 心肌缺血 | CISH,MYL6,ANXA2,CXCL2,TIMP1,IκBα,MT2,BTG2,CRIP2,SRST,PTGDS,SAA3,CCL2,UQCC1,S100A8,S100A9,YIPF4,TNP1,SNRPB,TRADD,RUVBL1,KRT36,A4GALT,MAP3K6,PNP,MT1,PRP2,UQCR10,MYL12B,TMEM70,HADH,DDB1,ROMO1,PVALB,ATP6V0E2,USE1,SRSF5 |
| 数据集 | 生物标志物 | AUC值 |
|---|---|---|
| AMI | IκBα | 0.91 |
| ROMO1 | 0.78 | |
| RUVBL1 | 0.67 | |
| 心肌缺血 | BTG2 | 0.78 |
| USE1 | 0.77 | |
| S100A8 | 0.74 | |
| ROMO1 | 0.63 | |
| ANXA2 | 0.61 | |
| RUVBL1 | 0.61 | |
| PVALB | 0.53 | |
| MYL6 | 0.49 |
表3 生物标志物的AUC值
Tab. 3 AUC of biomarkers
| 数据集 | 生物标志物 | AUC值 |
|---|---|---|
| AMI | IκBα | 0.91 |
| ROMO1 | 0.78 | |
| RUVBL1 | 0.67 | |
| 心肌缺血 | BTG2 | 0.78 |
| USE1 | 0.77 | |
| S100A8 | 0.74 | |
| ROMO1 | 0.63 | |
| ANXA2 | 0.61 | |
| RUVBL1 | 0.61 | |
| PVALB | 0.53 | |
| MYL6 | 0.49 |
| 基因 | 上游引物 | 下游引物 |
|---|---|---|
| β-actin | 5’-AGCCATGTACGTA GCCATCC-3’ | 5’-GCTGTGGTGGTGAAGCTGTA-3’ |
| IκBα | 5’-TGAAGGACGAGGAGTACGAGC-3’ | 5’-TGCAGGAACGAGTCTCCGT-3’ |
| USE1 | 5’-AGTCAGCATCCGAGCTAGAC-3’ | 5’-GCCATCTTGAGTGAATGTGACA-3’ |
| BTG2 | 5’-ATGAGCCACGGGAAGAGAAC-3’ | 5’-GCCCTACTGAAAACCTTGAGTC-3’ |
表4 内参基因和目的基因的引物序列
Tab. 4 Primer sequences of reference genes and target genes
| 基因 | 上游引物 | 下游引物 |
|---|---|---|
| β-actin | 5’-AGCCATGTACGTA GCCATCC-3’ | 5’-GCTGTGGTGGTGAAGCTGTA-3’ |
| IκBα | 5’-TGAAGGACGAGGAGTACGAGC-3’ | 5’-TGCAGGAACGAGTCTCCGT-3’ |
| USE1 | 5’-AGTCAGCATCCGAGCTAGAC-3’ | 5’-GCCATCTTGAGTGAATGTGACA-3’ |
| BTG2 | 5’-ATGAGCCACGGGAAGAGAAC-3’ | 5’-GCCCTACTGAAAACCTTGAGTC-3’ |
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