Journal of Forensic Medicine ›› 2021, Vol. 37 ›› Issue (5): 621-626.DOI: 10.12116/j.issn.1004-5619.2020.400708

• Original Articles • Previous Articles     Next Articles

Estimating Postmortem Interval Using Intestinal Microbiota Diversity Based on 16S rRNA High-throughput Sequencing Technology

Jie CAO1(), Wen-jin LI1, Yi-fei WANG1, Guo-shuai AN1, Xiao-jun LU1,2, Qiu-xiang DU1, Jin LI3(), Jun-hong SUN1()   

  1. 1.School of Forensic Medicine, Shanxi Medical University, Taiyuan 030001, China
    2.Criminal Investigation Detachment, Baotou Public Security Bureau, Baotou 014030, Inner Mongolia Autonomous Region, China
    3.Second Hospital of Shanxi Medical University, Taiyuan 030001, China
  • Received:2020-07-16 Online:2021-10-25 Published:2021-10-28
  • Contact: Jin LI,Jun-hong SUN

Abstract: Objective

To explore the correlation between intestinal microbiota and postmortem interval(PMI) in rats by using 16S rRNA high-throughput sequencing technology.

Methods

Rats were killed by anesthesia and placed at 16 ℃, and DNA was extracted in caecum at 14 time points of 0, 1, 2, 3, 5, 7, 9, 12, 15, 18, 21, 24, 27 and 30 d after death. The 16S rRNA high-throughput sequencing technology was used to detect intestinal microbiota in rat cecal contents, and the results were used to analyze the rat intestinal microbiota diversity and differences.

Results

The total number of intestinal microbial communities did not change significantly within 30 days after death, but the diversity showed an upward trend. A total of 119 bacterial communities were significantly changed at 13 time points after death. The models for PMI estimation were established by using partial least squares (PLS) regression at all time points, before 9 days and after 12 days, reaching an R2 of 0.795, 0.767 and 0.445, respectively; and the root mean square errors (RMSEs) were 6.57, 1.96 and 5.37 d, respectively.

Conclusion

Using 16S rRNA high-throughput sequencing technology, the composition and structure of intestinal microbiota changed significantly within 30 d after death. In addition, the established PLS regression model suggested that the PMI was highly correlated with intestinal microbiota composition, showing a certain time series change.

Key words: forensic pathology, 16S rRNA, postmortem interval estimation, intestinal microbial community, high-throughput sequencing, rats

CLC Number: